Function reference • mmtravis

All functions
`%w/o%`	x without y
`mt_batch()`	Correct for batch-effects in `mmt` objects based on variable/sample metadata.
`mt_diffexprs()`	Calculate differential expression statistics by a grouping variable.
`mt_dumpDE()`	Extract results from DE analysis done using `mt_diffexprs`.
`mt_gather()`	Gather the mmt object into one dataframe, suitable for e.g. ggplot or custom analysis (internal function)
`mt_load()`	Load the transcriptomics data, associated gene data and metadata.
`mt_loadMetaT()`	Load data produced by the MetaT pipeline into R.
`mt_plotpairs()`	Plot multiple combinations of sample gene expressions in a pairs plot
`mt_stackbar()`	Make a stacked barplot of the sequencing statistics.
`mt_subset()`	Normalise and subset the data in `mmt` objects based on variable/sample metadata.
`print(<mmt>)`	Prints mmt object summary (internal function)
`setroworder()`	The row-version of setcolorder in data.table (internal function)
`vis_boxplot()`	Visually appealing boxplots
`vis_ordinate()`	Visually appealing ordination plots

Reference